Variant DetailsVariant: nsv831795 Internal ID | 16108978 | Landmark | | Location Information | | Cytoband | 10p13 | Allele length | Assembly | Allele length | hg38 | 149107 | hg19 | 149107 | hg18 | 149107 | hg17 | 149107 |
| Variant Type | CNV gain | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | nssv1448233, nssv1448235, nssv1448234, nssv1448236, nssv1448237, nssv1448231, nssv1448232 | Samples | | Known Genes | FAM188A, ITGA8 | Method | BAC aCGH | Analysis | Experimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold. | Platform | GPL2616 | Comments | | Reference | Wong_et_al_2007 | Pubmed ID | 17160897 | Accession Number(s) | nsv831795
| Frequency | Sample Size | 95 | Observed Gain | 7 | Observed Loss | 0 | Observed Complex | 0 | Frequency | n/a |
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