A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv831795



Internal ID16108978
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr10:15683863..15832969hg38UCSC Ensembl
Outerchr10:15725862..15874968hg19UCSC Ensembl
Outerchr10:15765868..15914974hg18UCSC Ensembl
Outerchr10:15765868..15914974hg17UCSC Ensembl
Cytoband10p13
Allele length
AssemblyAllele length
hg38149107
hg19149107
hg18149107
hg17149107
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1448234, nssv1448232, nssv1448231, nssv1448235, nssv1448236, nssv1448237, nssv1448233
Samples
Known GenesFAM188A, ITGA8
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv831795
Frequency
Sample Size95
Observed Gain7
Observed Loss0
Observed Complex0
Frequencyn/a


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