A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv831728



Internal ID16108911
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr9:128237994..128416514hg38UCSC Ensembl
Outerchr9:131000273..131178793hg19UCSC Ensembl
Outerchr9:130040094..130218614hg18UCSC Ensembl
Outerchr9:128079827..128258347hg17UCSC Ensembl
Cytoband9q34.11
Allele length
AssemblyAllele length
hg38178521
hg19178521
hg18178521
hg17178521
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1448030
Samples
Known GenesCOQ4, DNM1, GOLGA2, MIR199B, MIR219-2, MIR2964A, MIR3154, SLC27A4, SWI5, TRUB2, URM1
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv831728
Frequency
Sample Size95
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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