A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv831682



Internal ID16108865
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr9:107174900..107313172hg38UCSC Ensembl
Outerchr9:109937181..110075453hg19UCSC Ensembl
Outerchr9:108977002..109115274hg18UCSC Ensembl
Outerchr9:107016736..107155008hg17UCSC Ensembl
Cytoband9q31.2
Allele length
AssemblyAllele length
hg38138273
hg19138273
hg18138273
hg17138273
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1447937, nssv1447938
Samples
Known GenesRAD23B
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv831682
Frequency
Sample Size95
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


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