A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv831378



Internal ID16455247
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr8:85521114..85657426hg38UCSC Ensembl
Outerchr8:86433343..86569655hg19UCSC Ensembl
Outerchr8:86620595..86756907hg18UCSC Ensembl
Outerchr8:86620595..86756907hg17UCSC Ensembl
Cytoband8q21.2
Allele length
AssemblyAllele length
hg38136313
hg19136313
hg18136313
hg17136313
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1447299, nssv1447292, nssv1447293, nssv1447297, nssv1447294, nssv1447298
Samples
Known GenesREXO1L1, REXO1L2P
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv831378
Frequency
Sample Size95
Observed Gain3
Observed Loss3
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer