A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv831313



Internal ID16108496
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr8:51546275..51726408hg38UCSC Ensembl
Outerchr8:52458835..52638968hg19UCSC Ensembl
Outerchr8:52621388..52801521hg18UCSC Ensembl
Outerchr8:52621388..52801521hg17UCSC Ensembl
Cytoband8q11.22
Allele length
AssemblyAllele length
hg38180134
hg19180134
hg18180134
hg17180134
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1447078, nssv1447076, nssv1447077
Samples
Known GenesPXDNL
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv831313
Frequency
Sample Size95
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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