A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv831224



Internal ID16108407
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr8:7260155..7413535hg38UCSC Ensembl
Outerchr8:7117677..7271057hg19UCSC Ensembl
Outerchr8:7105087..7258467hg18UCSC Ensembl
Outerchr8:7105087..7258467hg17UCSC Ensembl
Cytoband8p23.1
Allele length
AssemblyAllele length
hg38153381
hg19153381
hg18153381
hg17153381
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1446877, nssv1446883, nssv1446869, nssv1446866, nssv1446878, nssv1446881, nssv1446875, nssv1446870, nssv1446882, nssv1446867, nssv1446885, nssv1446871, nssv1446874, nssv1446888, nssv1446886, nssv1446868, nssv1446876, nssv1446887, nssv1446879, nssv1446880, nssv1446872
Samples
Known GenesDEFB109P1B, FAM66B, LINC00965, USP17L1P, USP17L4, ZNF705G
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv831224
Frequency
Sample Size95
Observed Gain1
Observed Loss20
Observed Complex0
Frequencyn/a


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