Variant DetailsVariant: nsv831177 | Internal ID | 16108360 | | Landmark | | | Location Information | | | Cytoband | 7q35 | | Allele length | | Assembly | Allele length | | hg38 | 174441 | | hg19 | 174441 | | hg18 | 174441 | | hg17 | 174441 |
| | Variant Type | CNV loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | | | Supporting Variants | nssv1446778, nssv1446760, nssv1446766, nssv1446758, nssv1446783, nssv1446779, nssv1446786, nssv1446780, nssv1446767, nssv1446756, nssv1446772, nssv1446782, nssv1446764, nssv1446750, nssv1446777, nssv1446752, nssv1446776, nssv1446748, nssv1446763, nssv1446738, nssv1446759, nssv1446746, nssv1446769, nssv1446771, nssv1446775, nssv1446749, nssv1446761, nssv1446744, nssv1446768, nssv1446770, nssv1446741, nssv1446754, nssv1446747, nssv1446774, nssv1446743, nssv1446742, nssv1446781, nssv1446765, nssv1446757, nssv1446745, nssv1446753, nssv1446755, nssv1446785 | | Samples | | | Known Genes | ARHGEF5, NOBOX, RNU6-57P, TPK1 | | Method | BAC aCGH | | Analysis | Experimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold. | | Platform | GPL2616 | | Comments | | | Reference | Wong_et_al_2007 | | Pubmed ID | 17160897 | | Accession Number(s) | nsv831177
| | Frequency | | Sample Size | 95 | | Observed Gain | 0 | | Observed Loss | 43 | | Observed Complex | 0 | | Frequency | n/a |
|
|
