A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv831083



Internal ID16108266
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr7:102340560..102655422hg38UCSC Ensembl
Outerchr7:101981005..102295869hg19UCSC Ensembl
Outerchr7:101767725..102083105hg18UCSC Ensembl
Outerchr7:101574440..101889820hg17UCSC Ensembl
Cytoband7q22.1
Allele length
AssemblyAllele length
hg38314863
hg19314865
hg18315381
hg17315381
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1446346, nssv1446338, nssv1446372, nssv1446365, nssv1446359, nssv1446371, nssv1446344, nssv1446357, nssv1446368, nssv1446369, nssv1446331, nssv1446358, nssv1446353, nssv1446333, nssv1446367, nssv1446334, nssv1446339, nssv1446350, nssv1446360, nssv1446336, nssv1446335, nssv1446364, nssv1446343, nssv1446349, nssv1446355, nssv1446341, nssv1446374, nssv1446376, nssv1446347, nssv1446370, nssv1446332, nssv1446361, nssv1446356, nssv1446375, nssv1446363, nssv1446345, nssv1446348, nssv1446337, nssv1446342, nssv1446352, nssv1446354, nssv1446366
Samples
Known GenesALKBH4, LOC100289561, LOC100630923, LRWD1, MIR4467, MIR5090, ORAI2, POLR2J, POLR2J2, POLR2J3, PRKRIP1, RASA4, RASA4B, SPDYE2, SPDYE2B, SPDYE6, UPK3BL
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv831083
Frequency
Sample Size95
Observed Gain0
Observed Loss42
Observed Complex0
Frequencyn/a


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