A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv831075



Internal ID9421926
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr7:101049016..101273737hg38UCSC Ensembl
Outerchr7:100692297..100917018hg19UCSC Ensembl
Outerchr7:100479017..100703738hg18UCSC Ensembl
Outerchr7:100285732..100510453hg17UCSC Ensembl
Cytoband7q22.1
Allele length
AssemblyAllele length
hg38224722
hg19224722
hg18224722
hg17224722
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1446314
Samples
Known GenesAP1S1, CLDN15, FIS1, MIR4653, MOGAT3, MUC17, NAT16, PLOD3, SERPINE1, TRIM56, VGF, ZNHIT1
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv831075
Frequency
Sample Size95
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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