A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv831072



Internal ID16108255
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr7:100564880..100765212hg38UCSC Ensembl
Outerchr7:100162503..100362835hg19UCSC Ensembl
Outerchr7:100000439..100200771hg18UCSC Ensembl
Outerchr7:99807154..100007486hg17UCSC Ensembl
Cytoband7q22.1
Allele length
AssemblyAllele length
hg38200333
hg19200333
hg18200333
hg17200333
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1446301, nssv1446304, nssv1446299, nssv1446308, nssv1446309, nssv1446305, nssv1446310, nssv1446300, nssv1446306, nssv1446302, nssv1446303
Samples
Known GenesACTL6B, AGFG2, EPO, FBXO24, GIGYF1, GNB2, LRCH4, MOSPD3, PCOLCE, PCOLCE-AS1, POP7, SAP25, TFR2, ZAN
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv831072
Frequency
Sample Size95
Observed Gain0
Observed Loss11
Observed Complex0
Frequencyn/a


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