A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv830856



Internal ID16108039
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:162314215..162447392hg38UCSC Ensembl
Outerchr6:162735247..162868424hg19UCSC Ensembl
Outerchr6:162655237..162788414hg18UCSC Ensembl
Outerchr6:162705658..162838835hg17UCSC Ensembl
Cytoband6q26
Allele length
AssemblyAllele length
hg38133178
hg19133178
hg18133178
hg17133178
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1445790
Samples
Known GenesPARK2
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv830856
Frequency
Sample Size95
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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