A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv830662



Internal ID16107845
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:52064873..52264478hg38UCSC Ensembl
Outerchr6:51929671..52129276hg19UCSC Ensembl
Outerchr6:52037630..52237235hg18UCSC Ensembl
Outerchr6:52037630..52237235hg17UCSC Ensembl
Cytoband6p12.2
Allele length
AssemblyAllele length
hg38199606
hg19199606
hg18199606
hg17199606
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1445409
Samples
Known GenesIL17A, IL17F, MCM3, MIR133B, MIR206, PKHD1
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv830662
Frequency
Sample Size95
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer