Variant DetailsVariant: nsv830628![](http://dgv.tcag.ca/gb2/gbrowse_img/dgv2_hg18/?name=chr6:31995533..32055579;width=800;overview=1) Internal ID | 16107811 | Landmark | | Location Information | | Cytoband | 6p21.32 | Allele length | Assembly | Allele length | hg38 | 60047 | hg19 | 60047 | hg18 | 60047 | hg17 | 60047 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | nssv1445348, nssv1445336, nssv1445324, nssv1445352, nssv1445323, nssv1445343, nssv1445345, nssv1445327, nssv1445353, nssv1445354, nssv1445334, nssv1445361, nssv1445358, nssv1445346, nssv1445331, nssv1445332, nssv1445357, nssv1445339, nssv1445338, nssv1445328, nssv1445333, nssv1445349, nssv1445326, nssv1445325, nssv1445355, nssv1445350, nssv1445344, nssv1445342, nssv1445335, nssv1445356, nssv1445330, nssv1445359, nssv1445337, nssv1445360, nssv1445347, nssv1445341 | Samples | | Known Genes | C2, CFB, DXO, LOC102060414, MIR1236, NELFE, SKIV2L, STK19 | Method | BAC aCGH | Analysis | Experimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold. | Platform | GPL2616 | Comments | | Reference | Wong_et_al_2007 | Pubmed ID | 17160897 | Accession Number(s) | nsv830628
| Frequency | Sample Size | 95 | Observed Gain | 0 | Observed Loss | 36 | Observed Complex | 0 | Frequency | n/a |
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