Variant DetailsVariant: nsv830627![](http://dgv.tcag.ca/gb2/gbrowse_img/dgv2_hg18/?name=chr6:31604193..31767929;width=800;overview=1) Internal ID | 16107810 | Landmark | | Location Information | | Cytoband | 6p21.33 | Allele length | Assembly | Allele length | hg38 | 163737 | hg19 | 163737 | hg18 | 163737 | hg17 | 163737 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | nssv1445322 | Samples | | Known Genes | ABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C6orf47, CSNK2B, DDX39B, GPANK1, LST1, LTA, LTB, LY6G5B, LY6G5C, MCCD1, MIR6832, NCR3, NFKBIL1, PRRC2A, SNORA38, SNORD117, SNORD84, TNF | Method | BAC aCGH | Analysis | Experimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold. | Platform | GPL2616 | Comments | | Reference | Wong_et_al_2007 | Pubmed ID | 17160897 | Accession Number(s) | nsv830627
| Frequency | Sample Size | 95 | Observed Gain | 0 | Observed Loss | 1 | Observed Complex | 0 | Frequency | n/a |
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