A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv830620



Internal ID16107803
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:28206219..28380256hg38UCSC Ensembl
Outerchr6:28173997..28348033hg19UCSC Ensembl
Outerchr6:28281976..28456012hg18UCSC Ensembl
Outerchr6:28281976..28456012hg17UCSC Ensembl
Cytoband6p22.1
Allele length
AssemblyAllele length
hg38174038
hg19174037
hg18174037
hg17174037
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1445312, nssv1445314, nssv1445313
Samples
Known GenesNKAPL, PGBD1, TOB2P1, ZKSCAN3, ZKSCAN4, ZSCAN12, ZSCAN26, ZSCAN31, ZSCAN9
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv830620
Frequency
Sample Size95
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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