A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv830525



Internal ID9421376
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr1:88776863..88975647hg38UCSC Ensembl
Outerchr1:89242546..89441330hg19UCSC Ensembl
Outerchr1:89015134..89213918hg18UCSC Ensembl
Outerchr1:88954567..89153351hg17UCSC Ensembl
Cytoband1p22.2
Allele length
AssemblyAllele length
hg38198785
hg19198785
hg18198785
hg17198785
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1447717, nssv1447728
Samples
Known GenesCCBL2, GTF2B, PKN2
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv830525
Frequency
Sample Size95
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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