| Internal ID | 16454297 |
| Landmark | |
| Location Information | |
| Cytoband | 5q21.1 |
| Allele length | | Assembly | Allele length | | hg38 | 161550 | | hg19 | 161550 | | hg18 | 161550 | | hg17 | 161550 |
|
| Variant Type | CNV gain+loss |
| Copy Number | |
| Allele State | |
| Allele Origin | |
| Probe Count | |
| Validation Flag | |
| Merged Status | M |
| Merged Variants | |
| Supporting Variants | nssv1444928, nssv1444927, nssv1444930 |
| Samples | |
| Known Genes | LINC00491, LINC00492, SLCO6A1 |
| Method | BAC aCGH |
| Analysis | Experimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold. |
| Platform | GPL2616 |
| Comments | |
| Reference | Wong_et_al_2007 |
| Pubmed ID | 17160897 |
| Accession Number(s) | nsv830428
|
| Frequency | | Sample Size | 95 | | Observed Gain | 1 | | Observed Loss | 2 | | Observed Complex | 0 | | Frequency | n/a |
|
