A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv830344



Internal ID16107527
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr5:73125043..73300500hg38UCSC Ensembl
Outerchr5:72420870..72596327hg19UCSC Ensembl
Outerchr5:72456626..72632083hg18UCSC Ensembl
Outerchr5:72456626..72632083hg17UCSC Ensembl
Cytoband5q13.2
Allele length
AssemblyAllele length
hg38175458
hg19175458
hg18175458
hg17175458
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1444741, nssv1444742
Samples
Known GenesTMEM171, TMEM174
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv830344
Frequency
Sample Size95
Observed Gain1
Observed Loss1
Observed Complex0
Frequencyn/a


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