A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv830302



Internal ID16107485
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr5:55107550..55259351hg38UCSC Ensembl
Outerchr5:54403378..54555179hg19UCSC Ensembl
Outerchr5:54439135..54590936hg18UCSC Ensembl
Outerchr5:54439135..54590936hg17UCSC Ensembl
Cytoband5q11.2
Allele length
AssemblyAllele length
hg38151802
hg19151802
hg18151802
hg17151802
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1444485, nssv1444486
Samples
Known GenesCCNO, CDC20B, DHX29, GPX8, GZMA, MCIDAS, MIR449A, MIR449B, MIR449C
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv830302
Frequency
Sample Size95
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer