Variant DetailsVariant: nsv830183 Internal ID | 16107366 | Landmark | | Location Information | | Cytoband | 5p15.33 | Allele length | Assembly | Allele length | hg38 | 153173 | hg19 | 153173 | hg18 | 153173 | hg17 | 153173 |
| Variant Type | CNV gain+loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | nssv1444167, nssv1444166, nssv1444161, nssv1444160, nssv1444163, nssv1444159, nssv1444164, nssv1444165 | Samples | | Known Genes | AHRR, C5orf55, EXOC3, PP7080, SLC9A3 | Method | BAC aCGH | Analysis | Experimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold. | Platform | GPL2616 | Comments | | Reference | Wong_et_al_2007 | Pubmed ID | 17160897 | Accession Number(s) | nsv830183
| Frequency | Sample Size | 95 | Observed Gain | 1 | Observed Loss | 7 | Observed Complex | 0 | Frequency | n/a |
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