A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv830177



Internal ID16454046
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr4:189428080..189581225hg38UCSC Ensembl
Outerchr4:190349234..190502379hg19UCSC Ensembl
Outerchr4:190586228..190739373hg18UCSC Ensembl
Outerchr4:190724383..190877528hg17UCSC Ensembl
Cytoband4q35.2
Allele length
AssemblyAllele length
hg38153146
hg19153146
hg18153146
hg17153146
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1444148, nssv1444146, nssv1444147
Samples
Known Genes
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv830177
Frequency
Sample Size95
Observed Gain1
Observed Loss2
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer