A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv830116



Internal ID16453985
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr4:152415443..152613282hg38UCSC Ensembl
Outerchr4:153336595..153534434hg19UCSC Ensembl
Outerchr4:153556045..153753884hg18UCSC Ensembl
Outerchr4:153694200..153892039hg17UCSC Ensembl
Cytoband4q31.3
Allele length
AssemblyAllele length
hg38197840
hg19197840
hg18197840
hg17197840
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1444028
Samples
Known GenesDKFZP434I0714, FBXW7, MIR3140, MIR4453
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv830116
Frequency
Sample Size95
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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