A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv830018



Internal ID16453887
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr4:100056081..100106763hg38UCSC Ensembl
Outerchr4:100977238..101027920hg19UCSC Ensembl
Outerchr4:101196261..101246943hg18UCSC Ensembl
Outerchr4:101334416..101385098hg17UCSC Ensembl
Cytoband4q23
Allele length
AssemblyAllele length
hg3850683
hg1950683
hg1850683
hg1750683
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1443875, nssv1443880, nssv1443876, nssv1443882, nssv1443886, nssv1443873, nssv1443883, nssv1443877, nssv1443884, nssv1443879, nssv1443881, nssv1443870, nssv1443872, nssv1443871, nssv1443878
Samples
Known Genes
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv830018
Frequency
Sample Size95
Observed Gain0
Observed Loss15
Observed Complex0
Frequencyn/a


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