A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv830008



Internal ID16453877
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr4:92589806..92764784hg38UCSC Ensembl
Outerchr4:93510957..93685935hg19UCSC Ensembl
Outerchr4:93729980..93904958hg18UCSC Ensembl
Outerchr4:93868135..94043113hg17UCSC Ensembl
Cytoband4q22.1
Allele length
AssemblyAllele length
hg38174979
hg19174979
hg18174979
hg17174979
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1443819, nssv1443820, nssv1443817, nssv1443816, nssv1443815
Samples
Known GenesGRID2
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv830008
Frequency
Sample Size95
Observed Gain5
Observed Loss0
Observed Complex0
Frequencyn/a


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