Variant DetailsVariant: nsv829986 Internal ID | 16107169 | Landmark | | Location Information | | Cytoband | 4q21.21 | Allele length | Assembly | Allele length | hg38 | 164698 | hg19 | 164698 | hg18 | 164698 | hg17 | 164698 |
| Variant Type | CNV gain+loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | nssv1443742, nssv1443746, nssv1443750, nssv1443735, nssv1443737, nssv1443753, nssv1443738, nssv1443736, nssv1443751, nssv1443745, nssv1443747, nssv1443744, nssv1443731, nssv1443733, nssv1443743, nssv1443734, nssv1443748, nssv1443749, nssv1443732 | Samples | | Known Genes | RASGEF1B | Method | BAC aCGH | Analysis | Experimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold. | Platform | GPL2616 | Comments | | Reference | Wong_et_al_2007 | Pubmed ID | 17160897 | Accession Number(s) | nsv829986
| Frequency | Sample Size | 95 | Observed Gain | 9 | Observed Loss | 10 | Observed Complex | 0 | Frequency | n/a |
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