A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv829980



Internal ID16107163
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr4:79520954..79547621hg38UCSC Ensembl
Outerchr4:80442108..80468775hg19UCSC Ensembl
Outerchr4:80661132..80687799hg18UCSC Ensembl
Outerchr4:80799287..80825954hg17UCSC Ensembl
Cytoband4q21.21
Allele length
AssemblyAllele length
hg3826668
hg1926668
hg1826668
hg1726668
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1443724, nssv1443725, nssv1443726
Samples
Known GenesLINC00989
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv829980
Frequency
Sample Size95
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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