A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv829940



Internal ID9420791
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr4:56206175..56396564hg38UCSC Ensembl
Outerchr4:57072341..57262730hg19UCSC Ensembl
Outerchr4:56767098..56957487hg18UCSC Ensembl
Outerchr4:56913269..57103658hg17UCSC Ensembl
Cytoband4q12
Allele length
AssemblyAllele length
hg38190390
hg19190390
hg18190390
hg17190390
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1443669
Samples
Known GenesAASDH, KIAA1211, PPAT
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv829940
Frequency
Sample Size95
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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