A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv829829



Internal ID16107012
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr3:196747858..196887060hg38UCSC Ensembl
Outerchr3:196474729..196613931hg19UCSC Ensembl
Outerchr3:197959126..198098328hg18UCSC Ensembl
Outerchr3:197963039..198102241hg17UCSC Ensembl
Cytoband3q29
Allele length
AssemblyAllele length
hg38139203
hg19139203
hg18139203
hg17139203
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1443317, nssv1443316, nssv1443315
Samples
Known GenesPAK2, SENP5
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv829829
Frequency
Sample Size95
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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