A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv829692



Internal ID16453561
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr3:119008925..119182864hg38UCSC Ensembl
Outerchr3:118727772..118901711hg19UCSC Ensembl
Outerchr3:120210462..120384401hg18UCSC Ensembl
Outerchr3:120210462..120384401hg17UCSC Ensembl
Cytoband3q13.32
Allele length
AssemblyAllele length
hg38173940
hg19173940
hg18173940
hg17173940
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1443031, nssv1443030
Samples
Known GenesC3orf30, IGSF11, UPK1B
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv829692
Frequency
Sample Size95
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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