| Internal ID | 16064062 |
| Landmark | |
| Location Information | |
| Cytoband | 17q21.31 |
| Allele length | | Assembly | Allele length | | hg38 | 610805 | | hg19 | 610805 | | hg18 | 610170 | | hg17 | 610170 |
|
| Variant Type | CNV gain |
| Copy Number | |
| Allele State | |
| Allele Origin | |
| Probe Count | |
| Validation Flag | |
| Merged Status | M |
| Merged Variants | |
| Supporting Variants | nssv1421323, nssv1421325, nssv1421322 |
| Samples | |
| Known Genes | ARL17A, ARL17B, KANSL1, KANSL1-AS1, LOC644172, LRRC37A, LRRC37A2, NSF, NSFP1 |
| Method | ROMA |
| Analysis | Measured intensities without background subtraction were used to calculate ratios. Data were normalized using an intensity-based lowess curve fitting algorithm similar to that described in Yang et al. Log ratio values obtained from color reversal experiments were averaged and displayed as presented in the figures. Copy number polymorphisms (CNPs) were identified based on probe ratios using a Hidden Markov Model. |
| Platform | A custom Nimblegen photoprint 85,000 probe ROMA oligo array platform was used. |
| Comments | |
| Reference | Sebat_et_al_2004 |
| Pubmed ID | 15273396 |
| Accession Number(s) | nsv821687
|
| Frequency | | Sample Size | 31 | | Observed Gain | 3 | | Observed Loss | 0 | | Observed Complex | 0 | | Frequency | n/a |
|
