Internal ID | 16063717 |
Landmark | |
Location Information | |
Cytoband | 17q21.31 |
Allele length | Assembly | Allele length | hg38 | 205972 | hg19 | 205972 | hg18 | 205511 |
|
Variant Type | CNV deletion |
Copy Number | |
Allele State | |
Allele Origin | |
Probe Count | |
Validation Flag | |
Merged Status | M |
Merged Variants | |
Supporting Variants | nssv1419943 |
Samples | NA10851 |
Known Genes | ARL17A, ARL17B, LRRC37A, NSFP1 |
Method | Sequencing |
Analysis | Read-depth of sequencing coverage was calculated for each base of human reference genome assembly build 36.3 (hg18) by our own script. Influence of GC contents on the read-depth of sequencing coverage was adjusted using modified method suggested by Yoon et al. We sought the relationship between GC contents and read-depth of coverage in 100bp windows. Then the single base RD (Read depth) was adjusted by the relationship. |
Platform | Illumina IIx |
Comments | |
Reference | Ju_et_al_2010 |
Pubmed ID | 20802225 |
Accession Number(s) | nsv821581
|
Frequency | Sample Size | 1 | Observed Gain | 0 | Observed Loss | 1 | Observed Complex | 0 | Frequency | n/a |
|