Internal ID | 16063345 |
Landmark | |
Location Information | |
Cytoband | 3q28 |
Allele length | Assembly | Allele length | hg38 | 7071 | hg19 | 7071 | hg18 | 7071 |
|
Variant Type | CNV deletion |
Copy Number | |
Allele State | |
Allele Origin | |
Probe Count | |
Validation Flag | |
Merged Status | M |
Merged Variants | |
Supporting Variants | nssv1420362 |
Samples | NA10851 |
Known Genes | CCDC50 |
Method | Sequencing |
Analysis | Read-depth of sequencing coverage was calculated for each base of human reference genome assembly build 36.3 (hg18) by our own script. Influence of GC contents on the read-depth of sequencing coverage was adjusted using modified method suggested by Yoon et al. We sought the relationship between GC contents and read-depth of coverage in 100bp windows. Then the single base RD (Read depth) was adjusted by the relationship. |
Platform | Illumina IIx |
Comments | |
Reference | Ju_et_al_2010 |
Pubmed ID | 20802225 |
Accession Number(s) | nsv821209
|
Frequency | Sample Size | 1 | Observed Gain | 0 | Observed Loss | 1 | Observed Complex | 0 | Frequency | n/a |
|