Variant DetailsVariant: nsv820990Internal ID | 16063126 | Landmark | | Location Information | | Cytoband | 3p21.31 | Allele length | Assembly | Allele length | hg38 | 15261 | hg19 | 15261 | hg18 | 15261 |
| Variant Type | CNV duplication | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | nssv1420319 | Samples | NA10851 | Known Genes | APEH, MST1, RNF123 | Method | Sequencing | Analysis | Read-depth of sequencing coverage was calculated for each base of human reference genome assembly build 36.3 (hg18) by our own script. Influence of GC contents on the read-depth of sequencing coverage was adjusted using modified method suggested by Yoon et al. We sought the relationship between GC contents and read-depth of coverage in 100bp windows. Then the single base RD (Read depth) was adjusted by the relationship. | Platform | Illumina IIx | Comments | | Reference | Ju_et_al_2010 | Pubmed ID | 20802225 | Accession Number(s) | nsv820990
| Frequency | Sample Size | 1 | Observed Gain | 1 | Observed Loss | 0 | Observed Complex | 0 | Frequency | n/a |
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