A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv820959



Internal ID16063095
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:29447609..29476289hg38UCSC Ensembl
Innerchr16:29458930..29487610hg19UCSC Ensembl
Innerchr16:29366431..29395111hg18UCSC Ensembl
Cytoband16p11.2
Allele length
AssemblyAllele length
hg3828681
hg1928681
hg1828681
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1421175
SamplesNA10851
Known GenesBOLA2, BOLA2B, LOC388242, LOC606724, LOC613038, SLX1A, SLX1A-SULT1A3, SLX1B, SLX1B-SULT1A4, SULT1A3, SULT1A4
MethodSequencing
AnalysisRead-depth of sequencing coverage was calculated for each base of human reference genome assembly build 36.3 (hg18) by our own script. Influence of GC contents on the read-depth of sequencing coverage was adjusted using modified method suggested by Yoon et al. We sought the relationship between GC contents and read-depth of coverage in 100bp windows. Then the single base RD (Read depth) was adjusted by the relationship.
PlatformIllumina IIx
Comments
ReferenceJu_et_al_2010
Pubmed ID20802225
Accession Number(s)nsv820959
Frequency
Sample Size1
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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