A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv820519



Internal ID16062655
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr13:113841402..113842257hg38UCSC Ensembl
Innerchr13:114544375..114545230hg19UCSC Ensembl
Innerchr13:113568713..113569568hg18UCSC Ensembl
Cytoband13q34
Allele length
AssemblyAllele length
hg38856
hg19856
hg18856
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1421077
SamplesNA10851
Known GenesGAS6, GAS6-AS1
MethodSequencing
AnalysisRead-depth of sequencing coverage was calculated for each base of human reference genome assembly build 36.3 (hg18) by our own script. Influence of GC contents on the read-depth of sequencing coverage was adjusted using modified method suggested by Yoon et al. We sought the relationship between GC contents and read-depth of coverage in 100bp windows. Then the single base RD (Read depth) was adjusted by the relationship.
PlatformIllumina IIx
Comments
ReferenceJu_et_al_2010
Pubmed ID20802225
Accession Number(s)nsv820519
Frequency
Sample Size1
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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