A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv820189



Internal ID15584890
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:195614055..195729758hg38UCSC Ensembl
Innerchr3:195340926..195456629hg19UCSC Ensembl
Innerchr3:196822215..196942300hg18UCSC Ensembl
Cytoband3q29
Allele length
AssemblyAllele length
hg38115704
hg19115704
hg18120086
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1418776
SamplesAK1
Known GenesMIR570, MUC20, SDHAP2
MethodOligo aCGH
AnalysisThe array was scanned with Agilent DNA microarray scanner at 2 micron resolution. The resulting image was extracted by Agilent's Feature Extraction software. The log2 ratios were analyzed using NEXUS software. Each aberration call was manually checked to confirm the accuracy of the calls.
PlatformGSE19651
Comments
ReferenceKim_et_al_2009
Pubmed ID19587683
Accession Number(s)nsv820189
Frequency
Sample Size2
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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