A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv820161



Internal ID15238126
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:107402169..107403380hg38UCSC Ensembl
Innerchr5:106737870..106739081hg19UCSC Ensembl
Innerchr5:106765769..106766980hg18UCSC Ensembl
Cytoband5q21.3
Allele length
AssemblyAllele length
hg381212
hg191212
hg181212
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1419198
SamplesAK1
Known GenesEFNA5
MethodOligo aCGH
AnalysisThe array was scanned with Agilent DNA microarray scanner at 2 micron resolution. The resulting image was extracted by Agilent's Feature Extraction software. The log2 ratios were analyzed using NEXUS software. Each aberration call was manually checked to confirm the accuracy of the calls.
PlatformGSE19651
Comments
ReferenceKim_et_al_2009
Pubmed ID19587683
Accession Number(s)nsv820161
Frequency
Sample Size2
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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