A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv820125



Internal ID15238090
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:170230710..170234075hg38UCSC Ensembl
Innerchr3:169948498..169951863hg19UCSC Ensembl
Innerchr3:171431192..171434557hg18UCSC Ensembl
Cytoband3q26.2
Allele length
AssemblyAllele length
hg383366
hg193366
hg183366
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1419531
SamplesAK1
Known GenesPRKCI
MethodOligo aCGH
AnalysisThe array was scanned with Agilent DNA microarray scanner at 2 micron resolution. The resulting image was extracted by Agilent's Feature Extraction software. The log2 ratios were analyzed using NEXUS software. Each aberration call was manually checked to confirm the accuracy of the calls.
PlatformGSE19651
Comments
ReferenceKim_et_al_2009
Pubmed ID19587683
Accession Number(s)nsv820125
Frequency
Sample Size2
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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