A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv820048



Internal ID15238013
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:38791244..39365597hg38UCSC Ensembl
Innerchr9:38791241..39365594hg19UCSC Ensembl
Innerchr9:38781241..39355594hg18UCSC Ensembl
Cytoband9p13.1
Allele length
AssemblyAllele length
hg38574354
hg19574354
hg18574354
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1418806
SamplesAK1
Known GenesCNTNAP3, SPATA31A1, SPATA31A2
MethodOligo aCGH
AnalysisThe array was scanned with Agilent DNA microarray scanner at 2 micron resolution. The resulting image was extracted by Agilent's Feature Extraction software. The log2 ratios were analyzed using NEXUS software. Each aberration call was manually checked to confirm the accuracy of the calls.
PlatformGSE19651
Comments
ReferenceKim_et_al_2009
Pubmed ID19587683
Accession Number(s)nsv820048
Frequency
Sample Size2
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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