A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv819980



Internal ID15237945
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:38649515..38651094hg38UCSC Ensembl
Innerchr3:38691006..38692585hg19UCSC Ensembl
Innerchr3:38666010..38667589hg18UCSC Ensembl
Cytoband3p22.2
Allele length
AssemblyAllele length
hg381580
hg191580
hg181580
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1419287
SamplesAK1
Known GenesSCN5A
MethodOligo aCGH
AnalysisThe array was scanned with Agilent DNA microarray scanner at 2 micron resolution. The resulting image was extracted by Agilent's Feature Extraction software. The log2 ratios were analyzed using NEXUS software. Each aberration call was manually checked to confirm the accuracy of the calls.
PlatformGSE19651
Comments
ReferenceKim_et_al_2009
Pubmed ID19587683
Accession Number(s)nsv819980
Frequency
Sample Size2
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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