A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv819957



Internal ID15237922
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:31988273..32033484hg38UCSC Ensembl
Innerchr6:31956050..32001261hg19UCSC Ensembl
Innerchr6:32064029..32109240hg18UCSC Ensembl
Cytoband6p21.32
Allele length
AssemblyAllele length
hg3845212
hg1945212
hg1845212
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1418738
SamplesAK1
Known GenesC4A, C4B, C4B_2, CYP21A1P, CYP21A2, STK19, TNXA, TNXB
MethodOligo aCGH
AnalysisThe array was scanned with Agilent DNA microarray scanner at 2 micron resolution. The resulting image was extracted by Agilent's Feature Extraction software. The log2 ratios were analyzed using NEXUS software. Each aberration call was manually checked to confirm the accuracy of the calls.
PlatformGSE19651
Comments
ReferenceKim_et_al_2009
Pubmed ID19587683
Accession Number(s)nsv819957
Frequency
Sample Size2
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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