A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv819451



Internal ID15584152
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:32529475..32552780hg38UCSC Ensembl
Innerchr6:32497252..32520557hg19UCSC Ensembl
Innerchr6:32605230..32628535hg18UCSC Ensembl
Cytoband6p21.32
Allele length
AssemblyAllele length
hg3823306
hg1923306
hg1823306
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1418689
SamplesAK1
Known GenesHLA-DRB5, HLA-DRB6
MethodOligo aCGH
AnalysisThe array was scanned with Agilent DNA microarray scanner at 2 micron resolution. The resulting image was extracted by Agilent's Feature Extraction software. The log2 ratios were analyzed using NEXUS software. Each aberration call was manually checked to confirm the accuracy of the calls.
PlatformGSE19651
Comments
ReferenceKim_et_al_2009
Pubmed ID19587683
Accession Number(s)nsv819451
Frequency
Sample Size2
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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