A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv818930



Internal ID16061085
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:124256444..124391587hg38UCSC Ensembl
Innerchr12:124740990..124876133hg19UCSC Ensembl
Innerchr12:123306943..123442086hg18UCSC Ensembl
Innerchr12:123265870..123401013hg17UCSC Ensembl
Cytoband12q24.31
Allele length
AssemblyAllele length
hg38135144
hg19135144
hg18135144
hg17135144
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1415693
SamplesNA12248
Known GenesFAM101A, MIR6880, NCOR2, ZNF664-FAM101A
MethodSNP array
AnalysisAn integrated HMM algorithm was developed and we constructed accurate models for log R Ratio and B Allele Frequency. We developed more realistic models for state transition between different copy number states. PennCNV incorporates the population allele frequency for each SNP and the distance between adjacent SNPs. We incorporated a Bayesian approach into PennCNV to use family information for a posteriori CNV validation and CNV boundary mapping.
PlatformGPL6433
Comments
ReferenceWang_et_al_2007
Pubmed ID17921354
Accession Number(s)nsv818930
Frequency
Sample Size112
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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