A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv818896



Internal ID16061051
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:23580508..23581181hg38UCSC Ensembl
Innerchr12:23733442..23734115hg19UCSC Ensembl
Innerchr12:23624709..23625382hg18UCSC Ensembl
Innerchr12:23624709..23625382hg17UCSC Ensembl
Cytoband12p12.1
Allele length
AssemblyAllele length
hg38674
hg19674
hg18674
hg17674
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1417584
SamplesNA18972
Known GenesSOX5
MethodSNP array
AnalysisAn integrated HMM algorithm was developed and we constructed accurate models for log R Ratio and B Allele Frequency. We developed more realistic models for state transition between different copy number states. PennCNV incorporates the population allele frequency for each SNP and the distance between adjacent SNPs. We incorporated a Bayesian approach into PennCNV to use family information for a posteriori CNV validation and CNV boundary mapping.
PlatformGPL6433
Comments
ReferenceWang_et_al_2007
Pubmed ID17921354
Accession Number(s)nsv818896
Frequency
Sample Size112
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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