A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv818872



Internal ID16061027
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:130245851..130340693hg38UCSC Ensembl
Innerchr11:130115746..130210588hg19UCSC Ensembl
Innerchr11:129620956..129715798hg18UCSC Ensembl
Innerchr11:129620956..129715798hg17UCSC Ensembl
Cytoband11q24.3
Allele length
AssemblyAllele length
hg3894843
hg1994843
hg1894843
hg1794843
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1417425
SamplesNA18952
Known GenesZBTB44
MethodSNP array
AnalysisAn integrated HMM algorithm was developed and we constructed accurate models for log R Ratio and B Allele Frequency. We developed more realistic models for state transition between different copy number states. PennCNV incorporates the population allele frequency for each SNP and the distance between adjacent SNPs. We incorporated a Bayesian approach into PennCNV to use family information for a posteriori CNV validation and CNV boundary mapping.
PlatformGPL6433
Comments
ReferenceWang_et_al_2007
Pubmed ID17921354
Accession Number(s)nsv818872
Frequency
Sample Size112
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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