A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv818748



Internal ID16060903
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:13014587..13018410hg38UCSC Ensembl
Innerchr10:13056587..13060410hg19UCSC Ensembl
Innerchr10:13096593..13100416hg18UCSC Ensembl
Innerchr10:13096593..13100416hg17UCSC Ensembl
Cytoband10p13
Allele length
AssemblyAllele length
hg383824
hg193824
hg183824
hg173824
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1416085, nssv1415773, nssv1416174
SamplesNA12875, NA12813, NA12891
Known GenesCCDC3
MethodSNP array
AnalysisAn integrated HMM algorithm was developed and we constructed accurate models for log R Ratio and B Allele Frequency. We developed more realistic models for state transition between different copy number states. PennCNV incorporates the population allele frequency for each SNP and the distance between adjacent SNPs. We incorporated a Bayesian approach into PennCNV to use family information for a posteriori CNV validation and CNV boundary mapping.
PlatformGPL6433
Comments
ReferenceWang_et_al_2007
Pubmed ID17921354
Accession Number(s)nsv818748
Frequency
Sample Size112
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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