A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv818728



Internal ID16060883
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:131397036..131533047hg38UCSC Ensembl
Innerchr9:134272423..134408434hg19UCSC Ensembl
Innerchr9:133262244..133398255hg18UCSC Ensembl
Innerchr9:131301977..131437988hg17UCSC Ensembl
Cytoband9q34.13
Allele length
AssemblyAllele length
hg38136012
hg19136012
hg18136012
hg17136012
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1417706
SamplesNA18999
Known GenesPOMT1, PRRC2B, SNORD62A, SNORD62B, UCK1
MethodSNP array
AnalysisAn integrated HMM algorithm was developed and we constructed accurate models for log R Ratio and B Allele Frequency. We developed more realistic models for state transition between different copy number states. PennCNV incorporates the population allele frequency for each SNP and the distance between adjacent SNPs. We incorporated a Bayesian approach into PennCNV to use family information for a posteriori CNV validation and CNV boundary mapping.
PlatformGPL6433
Comments
ReferenceWang_et_al_2007
Pubmed ID17921354
Accession Number(s)nsv818728
Frequency
Sample Size112
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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