A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv818635



Internal ID16407476
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr8:62303056..62333124hg38UCSC Ensembl
Innerchr8:63215615..63245683hg19UCSC Ensembl
Innerchr8:63378169..63408237hg18UCSC Ensembl
Innerchr8:63378169..63408237hg17UCSC Ensembl
Cytoband8q12.3
Allele length
AssemblyAllele length
hg3830069
hg1930069
hg1830069
hg1730069
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1416853
SamplesNA19238
Known GenesNKAIN3
MethodSNP array
AnalysisAn integrated HMM algorithm was developed and we constructed accurate models for log R Ratio and B Allele Frequency. We developed more realistic models for state transition between different copy number states. PennCNV incorporates the population allele frequency for each SNP and the distance between adjacent SNPs. We incorporated a Bayesian approach into PennCNV to use family information for a posteriori CNV validation and CNV boundary mapping.
PlatformGPL6433
Comments
ReferenceWang_et_al_2007
Pubmed ID17921354
Accession Number(s)nsv818635
Frequency
Sample Size112
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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