A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv818577



Internal ID16407418
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr8:3603726..3620554hg38UCSC Ensembl
Innerchr8:3461248..3478076hg19UCSC Ensembl
Innerchr8:3448656..3465484hg18UCSC Ensembl
Innerchr8:3448656..3465484hg17UCSC Ensembl
Cytoband8p23.2
Allele length
AssemblyAllele length
hg3816829
hg1916829
hg1816829
hg1716829
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1418474
SamplesNA19193
Known GenesCSMD1
MethodSNP array
AnalysisAn integrated HMM algorithm was developed and we constructed accurate models for log R Ratio and B Allele Frequency. We developed more realistic models for state transition between different copy number states. PennCNV incorporates the population allele frequency for each SNP and the distance between adjacent SNPs. We incorporated a Bayesian approach into PennCNV to use family information for a posteriori CNV validation and CNV boundary mapping.
PlatformGPL6433
Comments
ReferenceWang_et_al_2007
Pubmed ID17921354
Accession Number(s)nsv818577
Frequency
Sample Size112
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer