A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv818300



Internal ID16407141
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:105411374..105439269hg38UCSC Ensembl
Innerchr1:105953996..105981891hg19UCSC Ensembl
Innerchr1:105755519..105783414hg18UCSC Ensembl
Innerchr1:105666017..105693912hg17UCSC Ensembl
Cytoband1p21.1
Allele length
AssemblyAllele length
hg3827896
hg1927896
hg1827896
hg1727896
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1417812, nssv1417811
SamplesNA18853, NA18852
Known Genes
MethodSNP array
AnalysisAn integrated HMM algorithm was developed and we constructed accurate models for log R Ratio and B Allele Frequency. We developed more realistic models for state transition between different copy number states. PennCNV incorporates the population allele frequency for each SNP and the distance between adjacent SNPs. We incorporated a Bayesian approach into PennCNV to use family information for a posteriori CNV validation and CNV boundary mapping.
PlatformGPL6433
Comments
ReferenceWang_et_al_2007
Pubmed ID17921354
Accession Number(s)nsv818300
Frequency
Sample Size112
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


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